PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118398.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 259aa    MW: 29413.8 Da    PI: 8.0145
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20181215135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  XP_009118398.1 181 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 215
                     *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16174237No hitNo description
SMARTSM004013.0E-20175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084179211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15179212IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.22E-18180229No hitNo description
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003202.1E-18181215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNWLPEEEFN DSFFDDLINH INFPLEDTTT NGGEGEDWES KFQHLEPPPM DLFTTFPSEF  60
TSSYGINKEV AHVPVLKQSS SSSPPDVKVS KLFQSSSPVS VLESSDGSFS PQNLISQSLS  120
FPVKGMRSKR KRPTAQRLRF LYPFEASKPE SYYSSEQHAK KKRKTSHTEA SSYDDGIVRR  180
CTHCETTKTP QWREGPNGPK TLCNACGVRF RSGRLVPEYR PASSPTFIPS LHSNSHRKII  240
EMRRKEGDEF DNSMIHSKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118398.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-118GAT11_ARATH; GATA transcription factor 11
TrEMBLM4ES300.0M4ES30_BRARP; Uncharacterized protein
STRINGBra031608.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-100GATA transcription factor 11